E.coli K-12 (MG1655) Tat secretome

UniProt Name:
Iron(3+)-hydroxamate-binding protein FhuD (Ferric hydroxamate uptake protein D) (Ferrichrome-binding periplasmic protein) (Iron(III)-hydroxamate-binding protein FhuD)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 8522527
References:
PMID: 17218314 PMID: 8522527
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.469 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Chelatase-like SCOP: 53799
Super Family:
Helical backbone metal receptor
SCOP: 53807

Go to Complexes

UniProt Name:
Protein NrfC
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 15280383
References:
PMID: 15280383 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 19348461 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Ferredoxin-like SCOP: 54861
Super Family:
4Fe-4S ferredoxins
SCOP: 54862

Go to Complexes

UniProt Name:
Ferredoxin-type protein NapG (Ubiquinol--[NapC cytochrome c] reductase NapG subunit)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 11967083
References:
PMID: 11967083 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 19348461 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.067 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Ferredoxin-like SCOP: 54861
Super Family:
4Fe-4S ferredoxins
SCOP: 54862

Go to Complexes

UniProt Name:
Uncharacterized protein YcbK
Localization:
Periplasmic
Notes:
TAT secretion system.
References:
PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 19767571
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Hedgehog/DD-peptidase SCOP: 55165
Super Family:
Hedgehog/DD-peptidase
SCOP: 55166

Go to Complexes

UniProt Name:
Cell division protein FtsP
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 9298646
References:
PMID: 10593889 PMID: 17218314 PMID: 19135451 PMID: 9298646
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 12488465 PMID: 20222674 PMID: 19003857 PMID: 19767571
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
3.23 ppm

Class:
All beta proteins
SCOP: 48724
Fold:
Cupredoxin-like SCOP: 49502
Super Family:
Cupredoxins
SCOP: 49503

Go to Complexes

UniProt Name:
Deferrochelatase/peroxidase EfeB (EC 1.11.1.-)
Localization:
Periplasmic
Notes:
TAT secretion system.
References:
PMID: 16551627 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.435 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Ferredoxin-like SCOP: 54861
Super Family:
Dimeric alpha+beta barrel
SCOP: 54909

Go to Complexes

UniProt Name:
Formate dehydrogenase-O major subunit (EC 1.17.1.9) (Aerobic formate dehydrogenase major subunit) (FDH-Z subunit alpha) (Formate dehydrogenase-O subunit alpha)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 12923080
References:
PMID: 12923080 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 12624733 PMID: 12488465 PMID: 19348461 PMID: 20222674 PMID: 16967446 PMID: 16858726 PMID: 19767571 PMID: 20521846 PMID: 15115803 PMID: 20932056 PMID: 17446557 PMID: 18796603 PMID: 20923772
Proteomics / Inner Membrane fraction:
PMID: 17446557

Protein molec/cell:
-
PaxDb:
33 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Formate dehydrogenase/DMSO reductase, domains 1-3 SCOP: 53705
Super Family:
ADC-like
SCOP: 50692
Formate dehydrogenase/DMSO reductase, domains 1-3
SCOP: 53706

Go to Complexes

UniProt Name:
Trimethylamine-N-oxide reductase 1 (TMAO reductase 1) (Trimethylamine oxidase 1) (EC 1.7.2.3)
Localization:
Periplasmic
Notes:
TAT secretion system. Trimethylamine N-oxide (TMAO) respiration system is encoded by the torCAD operon and comprises a periplasmic TMAO reductase (TorA) and a c-type cytochrome (TorC), which shuttles electrons to TorA. Interaction studies showed that, when immature, TorC can no longer bind TorA efficiently but can bind the periplasmic detector region of sensor TorS. Electron transfer and binding of the c-type cytochrome TorC to the trimethylamine N-oxide reductase TorD, a cytoplasmic chaperone that interacts with the unfolded trimethylamine N-oxide reductase enzyme (TorA). The absence of TorD protein leads to a two times decrease of the final amount of TorA enzyme. PMID: 15073303
References:
PMID: 11056172 PMID: 15073303 PMID: 17218314 PMID: 2512991 PMID: 9632735
Pseudogene/Mobile Element:
-

mRNA molec/cell:
0

Proteomics:
PMID: 16606699
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
0
PaxDb:
0.588 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Formate dehydrogenase/DMSO reductase, domains 1-3 SCOP: 53705
Super Family:
ADC-like
SCOP: 50692
Formate dehydrogenase/DMSO reductase, domains 1-3
SCOP: 53706

Go to Complexes

UniProt Name:
Periplasmic nitrate reductase (EC 1.9.6.1)
Localization:
Periplasmic
Notes:
TAT secretion system. Nitrate reductase, napFDAGHBC, is located in the periplasm. E. coli also expresses two membrane-bound proton-translocating nitrate reductases, encoded by the narGHJI and narZYWV operons. PMID: 11844760 PMID: 10234835 Disulfide bond-containing protein PMID: 25664544
References:
PMID: 10234835 PMID: 11844760 PMID: 17218314 PMID: 25664544
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 12488465 PMID: 19348461 PMID: 20222674 PMID: 19767571
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
4.85 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Formate dehydrogenase/DMSO reductase, domains 1-3 SCOP: 53705
Super Family:
ADC-like
SCOP: 50692
Formate dehydrogenase/DMSO reductase, domains 1-3
SCOP: 53706

Go to Complexes

UniProt Name:
N-acetylmuramoyl-L-alanine amidase AmiA (EC 3.5.1.28)
Localization:
Periplasmic
Notes:
The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport pathwayPMID: 17218314PMID: 12787347. PMID: 12787347
References:
PMID: 12787347 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 12624733 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
2.88 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Phosphorylase/hydrolase-like SCOP: 53162
Super Family:
Zn-dependent exopeptidases
SCOP: 53187

Go to Complexes

UniProt Name:
Blue copper oxidase CueO (Copper efflux oxidase)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 9298646
References:
PMID: 17218314 PMID: 9298646
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 20222674 PMID: 19767571 PMID: 15115803
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
0
PaxDb:
75.3 ppm

Class:
All beta proteins
SCOP: 48724
Fold:
Cupredoxin-like SCOP: 49502
Super Family:
Cupredoxins
SCOP: 49503

Go to Complexes

UniProt Name:
Glucans biosynthesis protein D
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 9298646 Disulfide bond-containing protein PMID: 25664544
References:
PMID: 17218314 PMID: 25664544 PMID: 9298646
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 20222674 PMID: 19767571 PMID: 15115803
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
21 ppm

Class:
All beta proteins
SCOP: 48724
Fold:
Supersandwich SCOP: 49993
Super Family:
Galactose mutarotase-like
SCOP: 74650
E set domains
SCOP: 81296

Go to Complexes

UniProt Name:
Trimethylamine-N-oxide reductase 2 (TMAO reductase 2) (Trimethylamine oxidase 2) (EC 1.7.2.3)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 11004177
References:
PMID: 11004177 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 17137328 PMID: 19767571
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
2.7 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Formate dehydrogenase/DMSO reductase, domains 1-3 SCOP: 53705
Super Family:
ADC-like
SCOP: 50692
Formate dehydrogenase/DMSO reductase, domains 1-3
SCOP: 53706

Go to Complexes

UniProt Name:
N-acetylmuramoyl-L-alanine amidase AmiC (EC 3.5.1.28)
Localization:
Periplasmic
Notes:
TAT secretion system. PMID: 12787347
References:
PMID: 12787347 PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 20222674 PMID: 19767571 PMID: 15115803 PMID: 20932056 PMID: 19343722
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
1.29 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
Phosphorylase/hydrolase-like SCOP: 53162
Super Family:
Zn-dependent exopeptidases
SCOP: 53187

Go to Complexes

UniProt Name:
Colanic acid biosynthesis protein WcaM
Localization:
Periplasmic
Notes:
TAT secretion system.
References:
PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.734 ppm

Class:
All beta proteins
SCOP: 48724
Fold:
Single-stranded right-handed beta-helix SCOP: 51125
Super Family:
Pectin lyase-like
SCOP: 51126

Go to Complexes

UniProt Name:
Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA (EC 1.2.99.6)
Localization:
Periplasmic
Notes:
TAT secretion system. YagT protein contains a 49 amino acid Tat leader peptide that allows the export of the active heterotrimer to the periplasm. Tat substrates are matured in the cytoplasm prior to their translocation. PMID: 19368556
References:
PMID: 17218314 PMID: 19368556
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.152 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
beta-Grasp (ubiquitin-like) SCOP: 54235
Super Family:
CO dehydrogenase ISP C-domain like
SCOP: 47741
2Fe-2S ferredoxin-like
SCOP: 54292

Go to Complexes

UniProt Name:
Aldehyde oxidoreductase FAD-binding subunit PaoB (EC 1.2.99.6)
Localization:
Periplasmic
Notes:
TAT (piggyback) The YagT protein contains a 49 amino acid Tat leader peptide that allows the export of the active heterotrimer to the periplasm (data not shown). Tat substrates are matured in the cytoplasm prior to their translocation. The YagT protein contains a 49 amino acid Tat leader peptide that allows the export of the active heterotrimer to the periplasm (data not shown). PMID: 19368556
References:
PMID: 17218314 PMID: 19368556
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 19348461 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
FAD-binding/transporter-associated domain-like SCOP: 56175
Super Family:
CO dehydrogenase flavoprotein C-terminal domain-like
SCOP: 55447
FAD-binding/transporter-associated domain-like
SCOP: 56176

Go to Complexes

UniProt Name:
Uncharacterized ferredoxin-like protein YdhX
Localization:
Periplasmic
Notes:
TAT secretion system.
References:
PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.081 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Ferredoxin-like SCOP: 54861
Super Family:
4Fe-4S ferredoxins
SCOP: 54862

Go to Complexes

UniProt Name:
Aldehyde oxidoreductase molybdenum-binding subunit PaoC (EC 1.2.99.6)
Localization:
Periplasmic
Notes:
TAT (piggyback) The YagT protein contains a 49 amino acid Tat leader peptide that allows the export of the active heterotrimer to the periplasm. Tat substrates are matured in the cytoplasm prior to their translocation.
References:
PMID: 19368556
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 19348461 PMID: 20222674 PMID: 15115803
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
0.299 ppm

Class:
Alpha and beta proteins (a+b)
SCOP: 53931
Fold:
Molybdenum cofactor-binding domain SCOP: 56002
Super Family:
CO dehydrogenase molybdoprotein N-domain-like
SCOP: 54665
Molybdenum cofactor-binding domain
SCOP: 56003

Go to Complexes

UniProt Name:
Uncharacterized protein YahJ
Localization:
Periplasmic
Notes:
TAT secretion system.
References:
PMID: 17218314
Pseudogene/Mobile Element:
-

mRNA molec/cell:
-

Proteomics:
PMID: 16606699 PMID: 20222674
Proteomics / Inner Membrane fraction:
-

Protein molec/cell:
-
PaxDb:
1.48 ppm

Class:
Alpha and beta proteins (a/b)
SCOP: 51349
Fold:
TIM beta/alpha-barrel SCOP: 51350
Super Family:
Composite domain of metallo-dependent hydrolases
SCOP: 51338
Metallo-dependent hydrolases
SCOP: 51556

Go to Complexes