STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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First Author
Publication Title
Pubmed ID
Referring Protein(s)
Aboulwafa M, Saier MH Jr
Dependency of sugar transport and phosphorylation by the phosphoenolpyruvate-dependent phosphotransferase system on membranous phosphatidyl glycerol in Escherichia coli: studies with a pgsA mutant lacking phosphatidyl glycerophosphate synthase.
Res Microbiol. 2002 Dec;153(10):667-77.
Polynucleotide phosphorylase in isolated bacterial cell membranes.
J Biol Chem. 1962 Jan;237:170-5.
Abramson J, Riistama S, Larsson G, Jasaitis A, Svensson-Ek M, Laakkonen L, Puustinen A, Iwata S, Wikström M
The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site.
Nat Struct Biol. 2000 Oct;7(10):910-7
Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, Iwata S
Structure and mechanism of the lactose permease of Escherichia coli.
Science. 2003 Aug 1;301(5633):610-5
Agar JN, Krebs C, Frazzon J, Huynh BH, Dean DR, Johnson MK
IscU as a scaffold for iron-sulfur cluster biosynthesis: sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU.
Biochemistry. 2000 Jul 11;39(27):7856-62.
Akiyama Y, Ito K
A new Escherichia coli gene, fdrA, identified by suppression analysis of dominant negative FtsH mutations.
Mol Gen Genet. 1995 Nov 15;249(2):202-8.
Alba BM, Zhong HJ, Pelayo JC, Gross CA
degS (hhoB) is an essential Escherichia coli gene whose indispensable function is to provide sigma (E) activity.
Mol Microbiol. 2001 Jun;40(6):1323-33.
Albrecht R, Zeth K
Crystallization and preliminary X-ray data collection of the Escherichia coli lipoproteins BamC, BamD and BamE.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Dec 1;66(Pt 12):1586-90. doi: 10.1107/S1744309110034160. Epub 2010 Nov 25.
Alexeeva S, Gadella TW Jr, Verheul J, Verhoeven GS, den Blaauwen T
Direct interactions of early and late assembling division proteins in Escherichia coli cells resolved by FRET.
Mol Microbiol. 2010 Jul;77(2):384-98. doi: 10.1111/j.1365-2958.2010.07211.x
Alphey MS, Pirrie L, Torrie LS, Boulkeroua WA, Gardiner M, Sarkar A, Maringer M, Oehlmann W, Brenk R, Scherman MS, McNeil M, Rejzek M, Field RA, Singh M, Gray D, Westwood NJ, Naismith JH
Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa.
ACS Chem Biol. 2013 Feb 15;8(2):387-96. doi: 10.1021/cb300426u
Amarneh B, Vik SB
Direct transfer of NADH from malate dehydrogenase to complex I in Escherichia coli.
Cell Biochem Biophys. 2005;42(3):251-61.
Anderson MS, Bulawa CE, Raetz CR
The biosynthesis of gram-negative endotoxin. Formation of lipid A precursors from UDP-GlcNAc in extracts of Escherichia coli.
J Biol Chem. 1985 Dec 15;260(29):15536-41.
Andersson CS, Lundgren CA, Magnusdottir A, Ge C, Wieslander A, Martinez Molina D, Hogbom M
The Mycobacterium tuberculosis very-long-chain fatty acyl-CoA synthetase: structural basis for housing lipid substrates longer than the enzyme.
Structure. 2012 Jun 6;20(6):1062-70. doi: 10.1016/j.str.2012.03.012. Epub 2012 May 3.
Andrews DA, Xie M, Hughes V, Wilce MC, Roujeinikova A
Design, purification and characterization of a soluble variant of the integral membrane protein MotB for structural studies.
J R Soc Interface. 2013 Feb;10(79):20120717. doi: 10.1098/rsif.2012.0717
Arends SJ, Williams K, Scott RJ, Rolong S, Popham DL, Weiss DS
Discovery and characterization of three new Escherichia coli septal ring proteins that contain a SPOR domain: DamX, DedD, and RlpA.
J Bacteriol. 2010 Jan;192(1):242-55. doi: 10.1128/JB.01244-09
Arjunan P, Nemeria N, Brunskill A, Chandrasekhar K, Sax M, Yan Y, Jordan F, Guest JR, Furey W
Structure of the pyruvate dehydrogenase multienzyme complex E1 component from Escherichia coli at 1.85 A resolution.
Biochemistry. 2002 Apr 23;41(16):5213-21.
Armstrong SK, Pettis GS, Forrester LJ, McIntosh MA
The Escherichia coli enterobactin biosynthesis gene, entD: nucleotide sequence and membrane localization of its protein product.
Mol Microbiol. 1989 Jun;3(6):757-66.
Arts J, van Boxtel R, Filloux A, Tommassen J, Koster M
Export of the pseudopilin XcpT of the Pseudomonas aeruginosa type II secretion system via the signal recognition particle-Sec pathway.
J Bacteriol. 2007 Mar;189(5):2069-76. Epub 2006 Dec 15.
Azam TA, Hiraga S, Ishihama A
Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid.
Genes Cells. 2000 Aug;5(8):613-26.
Baars L, Ytterberg AJ, Drew D, Wagner S, Thilo C, van Wijk KJ, de Gier JW
Defining the role of the Escherichia coli chaperone SecB using comparative proteomics.
J Biol Chem. 2006 Apr 14;281(15):10024-34. Epub 2005 Dec 13.
Baars L, Ytterberg AJ, Drew D, Wagner S, Thilo C, van Wijk KJ, de Gier JW
Defining the role of the Escherichia coli chaperone SecB using comparative proteomics.
J Biol Chem. 2006 Apr 14;281(15):10024-34. Epub 2005 Dec 13.
Baecker PA, Yung SG, Rodriguez M, Austin E, Andreoli AJ
Periplasmic localization of nicotinate phosphoribosyltransferase in Escherichia coli.
J Bacteriol. 1978 Mar;133(3):1108-12
Baglieri J, Beck D, Vasisht N, Smith CJ, Robinson C
Structure of TatA paralog, TatE, suggests a structurally homogeneous form of Tat protein translocase that transports folded proteins of differing diameter.
J Biol Chem. 2012 Mar 2;287(10):7335-44. doi: 10.1074/jbc.M111.326355. Epub 2011 Dec 21.
Ballantine SP, Boxer DH
Isolation and characterisation of a soluble active fragment of hydrogenase isoenzyme 2 from the membranes of anaerobically grown Escherichia coli.
Eur J Biochem. 1986 Apr 15;156(2):277-84
Baranova N, Nikaido H
The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate.
J Bacteriol. 2002 Aug;184(15):4168-76.
Barnhart MM, Chapman MR
Curli biogenesis and function.
Annu Rev Microbiol. 2006;60:131-47.
Bashyam MD, Hasnain SE
The extracytoplasmic function sigma factors: role in bacterial pathogenesis.
Infect Genet Evol. 2004 Dec;4(4):301-8.
Bass RB, Strop P, Barclay M, Rees DC
Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel.
Science. 2002 Nov 22;298(5598):1582-7
Bayan N, Therisod H
Membrane-binding sites for acyl carrier protein in Escherichia coli.
FEBS Lett. 1989 Aug 14;253(1-2):221-5.
Bayan N, Therisod H
Evidence for interactions of acyl carrier protein with glycerol-3-phosphate acyltransferase, an inner membrane protein of Escherichia coli.
FEBS Lett. 1989 Sep 25;255(2):330-4.
Bayan N, Therisod H
Photoaffinity cross-linking of acyl carrier protein to Escherichia coli membranes.
Biochim Biophys Acta. 1992 Jan 24;1123(2):191-7.
Belunis CJ, Raetz CR
Biosynthesis of endotoxins. Purification and catalytic properties of 3-deoxy-D-manno-octulosonic acid transferase from Escherichia coli.
J Biol Chem. 1992 May 15;267(14):9988-97
Bendezu FO, Hale CA, Bernhardt TG, de Boer PA
RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli.
EMBO J. 2009 Feb 4;28(3):193-204. doi: 10.1038/emboj.2008.264. Epub 2008 Dec 11.
Bennett SE, Chen CY, Mosbaugh DW
Escherichia coli nucleoside diphosphate kinase does not act as a uracil-processing DNA repair nuclease.
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6391-6. Epub 2004 Apr 19.
Benoit S, Abaibou H, Mandrand-Berthelot MA
Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli.
J Bacteriol. 1998 Dec;180(24):6625-34.
Bernhardt TG, de Boer PA
SlmA, a nucleoid-associated, FtsZ binding protein required for blocking septal ring assembly over Chromosomes in E. coli.
Mol Cell. 2005 May 27;18(5):555-64.
Bertero MG, Rothery RA, Palak M, Hou C, Lim D, Blasco F, Weiner JH, Strynadka NC
Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A.
Nat Struct Biol. 2003 Sep;10(9):681-7
Bi EF, Lutkenhaus J
FtsZ ring structure associated with division in Escherichia coli.
Nature. 1991 Nov 14;354(6349):161-4.
Bilous PT, Cole ST, Anderson WF, Weiner JH
Nucleotide sequence of the dmsABC operon encoding the anaerobic dimethylsulphoxide reductase of Escherichia coli.
Mol Microbiol. 1988 Nov;2(6):785-95.
Biswas CJ, Thiele OW
Ubiquinones (Coenzyme Q) in hydrogen oxidizing bacteria.
Syst Appl Microbiol. 1983;4(2):181-3. doi: 10.1016/S0723-2020(83)80047-2
Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV
The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase.
J Biol Chem. 2009 Oct 30;284(44):30594-603. doi: 10.1074/jbc.M109.012278. Epub 2009 Sep 2.
Black PN, DiRusso CC, Metzger AK, Heimert TL
Cloning, sequencing, and expression of the fadD gene of Escherichia coli encoding acyl coenzyme A synthetase.
J Biol Chem. 1992 Dec 15;267(35):25513-20.
Blocker A, Komoriya K, Aizawa S
Type III secretion systems and bacterial flagella: insights into their function from structural similarities.
Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3027-30. Epub 2003 Mar 11.
Bodelon G, Marin E, Fernandez LA
Role of periplasmic chaperones and BamA (YaeT/Omp85) in folding and secretion of intimin from enteropathogenic Escherichia coli strains.
J Bacteriol. 2009 Aug;191(16):5169-79. doi: 10.1128/JB.00458-09. Epub 2009 Jun 12.
Boehm A, Kaiser M, Li H, Spangler C, Kasper CA, Ackermann M, Kaever V, Sourjik V, Roth V, Jenal U
Second messenger-mediated adjustment of bacterial swimming velocity.
Cell. 2010 Apr 2;141(1):107-16. doi: 10.1016/j.cell.2010.01.018. Epub 2010 Mar 18.
Boel G, Pichereau V, Mijakovic I, Maze A, Poncet S, Gillet S, Giard JC, Hartke A, Auffray Y, Deutscher J
Is 2-phosphoglycerate-dependent automodification of bacterial enolases implicated in their export?
J Mol Biol. 2004 Mar 19;337(2):485-96.
Bohm A, Boos W
Gene regulation in prokaryotes by subcellular relocalization of transcription factors.
Curr Opin Microbiol. 2004 Apr;7(2):151-6.
Bordes P, Lavatine L, Phok K, Barriot R, Boulanger A, Castanie-Cornet MP, Dejean G, Lauber E, Becker A, Arlat M, Gutierrez C
Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity.
J Bacteriol. 2011 Jan;193(1):246-64. doi: 10.1128/JB.00884-10. Epub 2010 Oct 22.
Bossemeyer D, Borchard A, Dosch DC, Helmer GC, Epstein W, Booth IR, Bakker EP
K+-transport protein TrkA of Escherichia coli is a peripheral membrane protein that requires other trk gene products for attachment to the cytoplasmic membrane.
J Biol Chem. 1989 Oct 5;264(28):16403-10.
Bouma CL, Reizer J, Reizer A, Robrish SA, Thompson J
6-phospho-alpha-D-glucosidase from Fusobacterium mortiferum: cloning, expression, and assignment to family 4 of the glycosylhydrolases.
J Bacteriol. 1997 Jul;179(13):4129-37.
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