STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Lubitz SP, Weiner JH
Arch Biochem Biophys. 2003 Oct 15;418(2):205-16
The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC).
Wai SN, Lindmark B, Soderblom T, Takade A, Westermark M, Oscarsson J, Jass J, Richter-Dahlfors A, Mizunoe Y, Uhlin BE
Cell. 2003 Oct 3;115(1):25-35.
Vesicle-mediated export and assembly of pore-forming oligomers of the enterobacterial ClyA cytotoxin.
Black PN, DiRusso CC, Metzger AK, Heimert TL
J Biol Chem. 1992 Dec 15;267(35):25513-20.
Cloning, sequencing, and expression of the fadD gene of Escherichia coli encoding acyl coenzyme A synthetase.
Rife CL, Parsons JF, Xiao G, Gilliland GL, Armstrong RN
Proteins. 2003 Dec 1;53(4):777-82.
Conserved structural elements in glutathione transferase homologues encoded in the genome of Escherichia coli.
Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E
J Biol Chem. 2004 Feb 20;279(8):6613-9. Epub 2003 Dec 3.
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli.
Savage DF, Egea PF, Robles-Colmenares Y, O'Connell JD 3rd, Stroud RM
PLoS Biol. 2003 Dec;1(3):E72
Architecture and selectivity in aquaporins: 2.5 a X-ray structure of aquaporin Z.
Scott JD, Ludwig RA
Microbiology. 2004 Jan;150(Pt 1):117-26.
Azorhizobium caulinodans electron-transferring flavoprotein N electrochemically couples pyruvate dehydrogenase complex activity to N2 fixation.
Hiniker A, Bardwell JC
J Biol Chem. 2004 Mar 26;279(13):12967-73. Epub 2004 Jan 15.
In vivo substrate specificity of periplasmic disulfide oxidoreductases.
Choi JH, Lee SY
Appl Microbiol Biotechnol. 2004 Jun;64(5):625-35. Epub 2004 Feb 14.
Secretory and extracellular production of recombinant proteins using Escherichia coli.
Kumar JK, Tabor S, Richardson CC
Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3759-64. Epub 2004 Mar 2.
Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli.
Edgren T, Nordlund S
J Bacteriol. 2004 Apr;186(7):2052-60.
The fixABCX genes in Rhodospirillum rubrum encode a putative membrane complex participating in electron transfer to nitrogenase.
Bohm A, Boos W
Curr Opin Microbiol. 2004 Apr;7(2):151-6.
Gene regulation in prokaryotes by subcellular relocalization of transcription factors.
Remaut H, Waksman G
Curr Opin Struct Biol. 2004 Apr;14(2):161-70.
Structural biology of bacterial pathogenesis.
Bennett SE, Chen CY, Mosbaugh DW
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6391-6. Epub 2004 Apr 19.
Escherichia coli nucleoside diphosphate kinase does not act as a uracil-processing DNA repair nuclease.
Miot M, Betton JM
Microb Cell Fact. 2004 May 7;3(1):4.
Protein quality control in the bacterial periplasm.
Gonnet P, Rudd KE, Lisacek F
Proteomics. 2004 Jun;4(6):1597-613.
Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
van den Berg B, Black PN, Clemons WM Jr, Rapoport TA
Science. 2004 Jun 4;304(5676):1506-9
Crystal structure of the long-chain fatty acid transporter FadL.
Pradel N, Ye C, Wu LF
Biochem Biophys Res Commun. 2004 Jul 9;319(4):1276-80
A cleavable signal peptide is required for the full function of the polytopic inner membrane protein FliP of Escherichia coli.
Tanaka Y, Itoh F, Kimata K, Aiba H
Mol Microbiol. 2004 Aug;53(3):941-51.
Membrane localization itself but not binding to IICB is directly responsible for the inactivation of the global repressor Mlc in Escherichia coli.
Tokuda H, Matsuyama S
Biochim Biophys Acta. 2004 Jul 23;1693(1):5-13.
Sorting of lipoproteins to the outer membrane in E. coli.
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