STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Dutzler R, Campbell EB, Cadene M, Chait BT, MacKinnon R
Nature. 2002 Jan 17;415(6869):287-94
X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity.
Coutts G, Thomas G, Blakey D, Merrick M
EMBO J. 2002 Feb 15;21(4):536-45.
Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.
Ferguson AD, Chakraborty R, Smith BS, Esser L, van der Helm D, Deisenhofer J
Science. 2002 Mar 1;295(5560):1715-9
Structural basis of gating by the outer membrane transporter FecA.
Jormakka M, Tornroth S, Byrne B, Iwata S
Science. 2002 Mar 8;295(5561):1863-8.
Molecular basis of proton motive force generation: structure of formate dehydrogenase-N.
Rangachari K, Davis CT, Eccleston JF, Hirst EM, Saldanha JW, Strath M, Wilson RJ
FEBS Lett. 2002 Mar 13;514(2-3):225-8.
SufC hydrolyzes ATP and interacts with SufB from Thermotoga maritima.
Arjunan P, Nemeria N, Brunskill A, Chandrasekhar K, Sax M, Yan Y, Jordan F, Guest JR, Furey W
Biochemistry. 2002 Apr 23;41(16):5213-21.
Structure of the pyruvate dehydrogenase multienzyme complex E1 component from Escherichia coli at 1.85 A resolution.
Walz AC, Demel RA, de Kruijff B, Mutzel R
Biochem J. 2002 Jul 15;365(Pt 2):471-9.
Aerobic sn-glycerol-3-phosphate dehydrogenase from Escherichia coli binds to the cytoplasmic membrane through an amphipathic alpha-helix.
Higgs PI, Larsen RA, Postle K
Mol Microbiol. 2002 Apr;44(1):271-81.
Quantification of known components of the Escherichia coli TonB energy transduction system: TonB, ExbB, ExbD and FepA.
Locher KP, Lee AT, Rees DC
Science. 2002 May 10;296(5570):1091-8
The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.
Mahren S, Enz S, Braun V
J Bacteriol. 2002 Jul;184(13):3704-11.
Functional interaction of region 4 of the extracytoplasmic function sigma factor FecI with the cytoplasmic portion of the FecR transmembrane protein of the Escherichia coli ferric citrate transport system.
Nagakubo S, Nishino K, Hirata T, Yamaguchi A
J Bacteriol. 2002 Aug;184(15):4161-7.
The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC.
Baranova N, Nikaido H
J Bacteriol. 2002 Aug;184(15):4168-76.
The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate.
Hwang PM, Choy WY, Lo EI, Chen L, Forman-Kay JD, Raetz CR, Privé GG, Bishop RE, Kay LE
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13560-5
Solution structure and dynamics of the outer membrane enzyme PagP by NMR.
Murakami S, Nakashima R, Yamashita E, Yamaguchi A
Nature. 2002 Oct 10;419(6907):587-93
Crystal structure of bacterial multidrug efflux transporter AcrB.
Bass RB, Strop P, Barclay M, Rees DC
Science. 2002 Nov 22;298(5598):1582-7
Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel.
Sijbrandi R, Urbanus ML, ten Hagen-Jongman CM, Bernstein HD, Oudega B, Otto BR, Luirink J
J Biol Chem. 2003 Feb 14;278(7):4654-9
Signal recognition particle (SRP)-mediated targeting and Sec-dependent translocation of an extracellular Escherichia coli protein.
Gevaert K, Van Damme J, Goethals M, Thomas GR, Hoorelbeke B, Demol H, Martens L, Puype M, Staes A, Vandekerckhove J
Mol Cell Proteomics. 2002 Nov;1(11):896-903.
Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins.
Uehara T, Park JT
J Bacteriol. 2003 Jan;185(2):679-82.
Identification of MpaA, an amidase in Escherichia coli that hydrolyzes the gamma-D-glutamyl-meso-diaminopimelate bond in murein peptides.
Samsonov VV, Samsonov VV, Sineoky SP
Res Microbiol. 2002 Dec;153(10):639-46.
DcrA and dcrB Escherichia coli genes can control DNA injection by phages specific for BtuB and FhuA receptors.
Aboulwafa M, Saier MH Jr
Res Microbiol. 2002 Dec;153(10):667-77.
Dependency of sugar transport and phosphorylation by the phosphoenolpyruvate-dependent phosphotransferase system on membranous phosphatidyl glycerol in Escherichia coli: studies with a pgsA mutant lacking phosphatidyl glycerophosphate synthase.
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