Protein with experimentally verified sub-cellular topologies

Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, Karamanou S, Economou A.

Mol Cell Proteomics. 2013

The Escherichia coli peripheral inner membrane proteome.

P76558 P77611 P77398 P77737 P77399 Q46845 P77488 P0AF93 P09372 P09373 P77748 P09831 Q46856 P0A6A3 P0A6B7 P0A6C8 P0A6E4 P0A6F1 P0A6F3 P0A6F5 P0A6F9 P0A6H5 P0A6K3 P0A6K6 P0A6L0 P0A6M8 P0A6P1 P0A6P7 P0A6R3 P0A6U8 P0A6X1 P0A6X7 P0A6Y1 P0A6Y5 P0A705 P0A707 P0A717 P0A759 P0A796 P0A799 P0A7D4 P0A7Z4 P0A800 P0A805 P0A817 P0A825 P0A836 P0A850 P0A858 P0A862 P0A870 P0A894 P0A8J8 P0A8L1 P0A8M0 P0A8M3 P0A8T7 P0A8V2 P0A8X0 P0A948 P0A953 P0A955 P0A991 P0A9B2 P0A9D8 P0A9F3 P0A9G6 P0A9H7 P0A9K3 P0A9K9 P0A9P6 P0A9Q1 P0A9Q5 P0A9S3 P0AA04 P0AA16 P0AA25 P0AAI5 P0AB71 P0AB77 P0AB89 P00363 P0ABD5 P00393 P0ABH7 P03004 P0ABP8 P04825 P0ABT2 P05055 P0AC33 P06149 P0AC38 P06959 P0AC62 P06992 P0AC69 P07000 P0AC92 P07014 P0ACB0 P07109 P0ACB4 P07821 P0ACC3 P08839 P0ACC7 P09152 P0ACD4 P09546 P0ACE7 P0A6A8 P0ACF0 P0A6E6 P0ACF4 P0A6J5 P0ACF8 P0A6P5 P0ACG1 P0A6P9 P0ACJ0 P0A6Q6 P0ACJ8 P0A6Y8 P0AD49 P0A6Z3 P0AD61 P0A756 P0ADG4 P0A763 P0ADG7 P0A7A7 P0ADN2 P0A7B1 P0ADT2 P0A7E1 P0AE01 P0A7E5 P0AE08 P0A7E9 P0AE18 P0A7G2 P0AEK2 P0A7X6 P0AES4 P0A8K1 P0AES6 P0A8P3 P0AF93 P0A8U0 P0AFF6 P0A9A6 P0AFG0 P0A9K7 P0AFG3 P0A9P0 P0AFG6 P0A9Q9 P0AFI7 P0A9R7 P00350 P0A9U3 P0AFP4 P0A9V1 P00452 P0A9W3 P0AFZ3 P0A9X1 P0AG20 P0A9X4 P00509 P0AAB4 P0AG30 P0AAF6 P00562 P0AAG0 P0AGE9 P0AAH0 P00579 P0AAH4 P0AGJ5 P0AAH8 P0AGJ9 P0AAJ5 P00582 P0ABA4 P0AGL7 P0ABA6 P0C8J8 P0ABB0 P00864 P0ABB4 P11447 P0ABF1 P13009 P0ABH0 P13445 P0ABK5 P16095 P0AC41 P16659 P0AC47 P16917 P0ADE6 P17169 P0ADP2 P17854 P0AE88 P18843 P0AED0 P00957 P0AEK4 P00959 P0AEZ3 P21177 P0AEZ9 P00960 P0AFC7 P00961 P0AFD1 P21499 P0AFD6 P21507 P0AFG8 P21599 P0AFI2 P22106 P0AFL6 P22256 P0AFM6 P22333 P0AFV8 P22523 P0AFY8 P22524 P0AG86 P00968 P0AGB6 P23538 P0AGD7 P23869 P0AGI8 P23871 P0C0R7 P23893 P0CE48 P23908 P10121 P24173 P10346 P24182 P10408 P24554 P10441 P25437 P10907 P25526 P11349 P25741 P13035 P25742 P14175 P25888 P16676 P27247 P17443 P27248 P17444 P27298 P17952 P27302 P19318 P27836 P19319 P03023 P21513 P28904 P21889 P29012 P04079 P23484 P32684 P23830 P33195 P25519 P33570 P25740 P36683 P25746 P05042 P27278 P37692 P27306 P05791 P27550 P37765 P30750 P05793 P31979 P38489 P32132 P38521 P33232 P39286 P33599 P39406 P33602 P43329 P33940 P45577 P35340 P45578 P36879 P06987 P37188 P60293 P37313 P60757 P37339 P07004 P37349 P60906 P37751 P61714 P39177 P62620 P39342 P62707 P42641 P62768 P46837 P63284 P50456 P67910 P56258 P68066 P60390 P68191 P60785 P68767 P61889 P07395 P63386 P69441 P64602 P07650 P69451 P75672 P69783 P75821 P69797 P75867 P69829 P75876 P69874 P75915 P75691 P08200 P75796 P08312 P75829 P76472 P75957 P08622 P76027 P76503 P77223

Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS

Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e

Nuclear magnetic resonance solution structure of the peptidoglycan-binding SPOR domain from Escherichia coli DamX: insights into septal localization.

Lemmin T, Soto CS, Clinthorne G, DeGrado WF, Dal Peraro M

PLoS Comput Biol. 2013;9(1):e1002878. doi: 10.1371/journal.pcbi.1002878

Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations.

P23836 P23837

Rueggeberg KG, Toba FA, Thompson MG, Campbell BR, Hay AG

Microbiology. 2013 Apr;159(Pt 4):691-700. doi: 10.1099/mic.0.064741-0

A Q-like transcription factor regulates biofilm development in Escherichia coli by controlling expression of the DLP12 lysis cassette.

Feng Y, Zhang H, Cronan JE

Mol Microbiol. 2013 Apr;88(1):77-92. doi: 10.1111/mmi.12170

Profligate biotin synthesis in α-proteobacteria - a developing or degenerating regulatory system?

Warner JR

Mol Cell. 2013 Feb 7;49(3):422-3. doi: 10.1016/j.molcel.2013.01.021.

YbeY: the jealous tailor.

Patel GJ, Kleinschmidt JH

Biochemistry. 2013 Jun 11;52(23):3974-86. doi: 10.1021/bi400103t

The lipid bilayer-inserted membrane protein BamA of Escherichia coli facilitates insertion and folding of outer membrane protein A from its complex with Skp.

P0A910 P0A940 P0AEU7

Hajj Chehade M, Loiseau L, Lombard M, Pecqueur L, Ismail A, Smadja M, Golinelli-Pimpaneau B, Mellot-Draznieks C, Hamelin O, Aussel L, Kieffer-Jaquinod S, Labessan N, Barras F, Fontecave M, Pierrel F

J Biol Chem. 2013 Jul 5;288(27):20085-92. doi: 10.1074/jbc.M113.480368

ubiI, a new gene in Escherichia coli coenzyme Q biosynthesis, is involved in aerobic C5-hydroxylation.

Sanders AN, Pavelka MS.

Microbiology. 2013 Sep;159(Pt 9):1842-52. doi: 10.1099/mic.0.069211-0

Phenotypic analysis of Eschericia coli mutants lacking L,D-transpeptidases.

P0AAX8 P75954 P76193 P22525 P39176

Stout V, Gottesman S

J Bacteriol. 1990 Feb;172(2):659-69.

RcsB and RcsC: a two-component regulator of capsule synthesis in Escherichia coli.

P0DMC5 P0DMC7

Rauschmeier M, Schüppel V, Tetsch L, Jung K

J Mol Biol. 2014 Jan 9;426(1):215-29. doi: 10.1016/j.jmb.2013.09.017

New insights into the interplay between the lysine transporter LysP and the pH sensor CadC in Escherichia coli.

P25737 P23890

Vijayan S, Mallick S, Dutta M, Narayani M, Ghosh AS

Curr Microbiol. 2014 Feb;68(2):174-9. doi: 10.1007/s00284-013-0453-z

PBP deletion mutants of Escherichia coli exhibit irregular distribution of MreB at the deformed zones.

P0A9X4 P0AEB2

Armstrong SK, Pettis GS, Forrester LJ, McIntosh MA

Mol Microbiol. 1989 Jun;3(6):757-66.

The Escherichia coli enterobactin biosynthesis gene, entD: nucleotide sequence and membrane localization of its protein product.

San Millan JL, Boyd D, Dalbey R, Wickner W, Beckwith J

J Bacteriol. 1989 Oct;171(10):5536-41

Use of phoA fusions to study the topology of the Escherichia coli inner membrane protein leader peptidase.

Ghosh BK, Owens K, Pietri R, Peterkofsky A

Proc Natl Acad Sci U S A. 1989 Feb;86(3):849-53.

Localization to the inner surface of the cytoplasmic membrane by immunoelectron microscopy of enzyme I of the phosphoenolpyruvate:sugar phosphotransferase system of Escherichia coli.

P37177 P08839

Brozek KA, Hosaka K, Robertson AD, Raetz CR

J Biol Chem. 1989 Apr 25;264(12):6956-66

Biosynthesis of lipopolysaccharide in Escherichia coli. Cytoplasmic enzymes that attach 3-deoxy-D-manno-octulosonic acid to lipid A.

Grabau C, Chang YY, Cronan JE Jr

J Biol Chem. 1989 Jul 25;264(21):12510-9

Lipid binding by Escherichia coli pyruvate oxidase is disrupted by small alterations of the carboxyl-terminal region.

Bayan N, Therisod H

FEBS Lett. 1989 Aug 14;253(1-2):221-5.

Membrane-binding sites for acyl carrier protein in Escherichia coli.

Forst S, Delgado J, Inouye M

Proc Natl Acad Sci U S A. 1989 Aug;86(16):6052-6.

Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli.

P0AA16 P0AEJ4

Bayan N, Therisod H

FEBS Lett. 1989 Sep 25;255(2):330-4.

Evidence for interactions of acyl carrier protein with glycerol-3-phosphate acyltransferase, an inner membrane protein of Escherichia coli.