STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies


Pubmed ID
First Author
Year
Publication Title
Relevant Protein
Hübner S, Declerck N, Diethmaier C, Le Coq D, Aymerich S, Stülke J
Nucleic Acids Res. 2011 May;39(10):4360-72. doi: 10.1093/nar/gkr021
Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family.
Pech M, Karim Z, Yamamoto H, Kitakawa M, Qin Y, Nierhaus KH
Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3199-203. doi: 10.1073/pnas.1012994108. Epub 2011 Feb 7.
Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations.
Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W, Cho HS, Chang I, Lee K, Ha NC
J Biol Chem. 2011 Apr 15;286(15):13541-9. doi: 10.1074/jbc.M110.202598. Epub 2011 Feb 16.
Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC.
Lee R, Aung-Htut MT, Kwik C, March PE
Protein Expr Purif. 2011 Jul;78(1):102-12. doi: 10.1016/j.pep.2011.02.009. Epub 2011 Feb 24.
Expression phenotypes suggest that Der participates in a specific, high affinity interaction with membranes.
Celis RT
J Biol Chem. 1990 Jan 25;265(3):1787-93.
Mutant of Escherichia coli K-12 with defective phosphorylation of two periplasmic transport proteins.
Hagan CL, Silhavy TJ, Kahne D
Annu Rev Biochem. 2011;80:189-210. doi: 10.1146/annurev-biochem-061408-144611.
beta-Barrel membrane protein assembly by the Bam complex.
Strozen TG, Stanley H, Gu Y, Boyd J, Bagdasarian M, Sandkvist M, Howard SP
J Bacteriol. 2011 May;193(9):2322-31. doi: 10.1128/JB.01413-10. Epub 2011 Mar 4.
Involvement of the GspAB complex in assembly of the type II secretion system secretin of Aeromonas and Vibrio species.
Minami N, Yasuda T, Ishii Y, Fujimori K, Amano F
J Biochem. 2011 May;149(5):519-27. doi: 10.1093/jb/mvr036. Epub 2011 Mar 23.
Regulatory role of cardiolipin in the activity of an ATP-dependent protease, Lon, from Escherichia coli.
Mazur O, Zimmer J
J Biol Chem. 2011 May 20;286(20):17601-6. doi: 10.1074/jbc.M111.227660. Epub 2011 Mar 25.
Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ.
Shajani Z, Sykes MT, Williamson JR
Annu Rev Biochem. 2011;80:501-26. doi: 10.1146/annurev-biochem-062608-160432.
Assembly of bacterial ribosomes.
Ohniwa RL, Ushijima Y, Saito S, Morikawa K
PLoS One. 2011 Apr 26;6(4):e19172. doi: 10.1371/journal.pone.0019172.
Proteomic analyses of nucleoid-associated proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus.
Cao Z, Song P, Xu Q, Su R, Zhu G
FEMS Microbiol Lett. 2011 Jul;320(1):9-14. doi: 10.1111/j.1574-6968.2011.02287.x. Epub 2011 May 6.
Overexpression and biochemical characterization of soluble pyridine nucleotide transhydrogenase from Escherichia coli.
Gabor E, Gohler AK, Kosfeld A, Staab A, Kremling A, Jahreis K
Eur J Cell Biol. 2011 Sep;90(9):711-20. doi: 10.1016/j.ejcb.2011.04.002. Epub 2011 May 28.
The phosphoenolpyruvate-dependent glucose-phosphotransferase system from Escherichia coli K-12 as the center of a network regulating carbohydrate flux in the cell.
Nenninger AA, Robinson LS, Hammer ND, Epstein EA, Badtke MP, Hultgren SJ, Chapman MR
Mol Microbiol. 2011 Jul;81(2):486-99. doi: 10.1111/j.1365-2958.2011.07706.x. Epub 2011 Jun 7.
CsgE is a curli secretion specificity factor that prevents amyloid fibre aggregation.
Hartl FU, Lecker S, Schiebel E, Hendrick JP, Wickner W
Cell. 1990 Oct 19;63(2):269-79.
The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane.
Huang J, Shi J, Liu Q, Xu Q, Xie X, Wen T, Chen N
Wei Sheng Wu Xue Bao. 2011 Apr;51(4):480-7
Effects of gene pta disruption on L-tryptophan fermentation.
Salje J, van den Ent F, de Boer P, Lowe J
Mol Cell. 2011 Aug 5;43(3):478-87. doi: 10.1016/j.molcel.2011.07.008.
Direct membrane binding by bacterial actin MreB.
Hagan CL, Kahne D
Biochemistry. 2011 Sep 6;50(35):7444-6. doi: 10.1021/bi2010784. Epub 2011 Aug 11.
The reconstituted Escherichia coli Bam complex catalyzes multiple rounds of beta-barrel assembly.
Krehenbrink M, Edwards A, Downie JA
Mol Microbiol. 2011 Oct;82(1):164-79. doi: 10.1111/j.1365-2958.2011.07803.x. Epub 2011 Sep 8.
The superoxide dismutase SodA is targeted to the periplasm in a SecA-dependent manner by a novel mechanism.
Waters LS, Sandoval M, Storz G
J Bacteriol. 2011 Nov;193(21):5887-97. doi: 10.1128/JB.05872-11
The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis.
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