STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies


Pubmed ID
First Author
Year
Publication Title
Relevant Protein
Metzger LE 4th, Raetz CR
Biochemistry. 2010 Aug 10;49(31):6715-26. doi: 10.1021/bi1008744.
An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis.
Denoncin K, Vertommen D, Paek E, Collet JF
J Biol Chem. 2010 Sep 17;285(38):29425-33. doi: 10.1074/jbc.M110.119321. Epub 2010 Jul 7.
The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential beta-barrel protein LptD.
Campos M, Nilges M, Cisneros DA, Francetic O
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13081-6. doi:10.1073/pnas.1001703107. Epub 2010 Jul 2.
Detailed structural and assembly model of the type II secretion pilus from sparse data.
Feng Y, Cronan JE
J Bacteriol. 2010 Sep;192(17):4289-99. doi: 10.1128/JB.00516-10. Epub 2010 Jul 9.
Overlapping repressor binding sites result in additive regulation of Escherichia coli FadH by FadR and ArcA.
Vinson HM, Gautam A, Olet S, Gibbs PS, Barigye R
J Antimicrob Chemother. 2010 Sep;65(9):1926-35. doi: 10.1093/jac/dkq246
Molecular analysis of porin gene transcription in heterogenotypic multidrug-resistant Escherichia coli isolates from scouring calves.
Ingerson-Mahar M, Briegel A, Werner JN, Jensen GJ, Gitai Z
Nat Cell Biol. 2010 Aug;12(8):739-46. doi: 10.1038/ncb2087. Epub 2010 Jul 18.
The metabolic enzyme CTP synthase forms cytoskeletal filaments.
Phue JN, Lee SJ, Kaufman JB, Negrete A, Shiloach J
Biotechnol Lett. 2010 Dec;32(12):1897-903. doi: 10.1007/s10529-010-0369-7
Acetate accumulation through alternative metabolic pathways in ackA (-) pta (-) poxB (-) triple mutant in E. coli B (BL21).
Huxley L, Quirk PG, Cotton NP, White SA, Jackson JB
Biochim Biophys Acta. 2011 Jan;1807(1):85-94. doi: 10.1016/j.bbabio.2010.08.005. Epub 2010 Aug 21.
The specificity of proton-translocating transhydrogenase for nicotinamide nucleotides.
Park SY, Cromie MJ, Lee EJ, Groisman EA
Cell. 2010 Sep 3;142(5):737-48
A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals.
Fraipont C, Alexeeva S, Wolf B, van der Ploeg R, Schloesser M, den Blaauwen T, Nguyen-Distèche M
Microbiology. 2011 Jan;157(Pt 1):251-9. doi: 10.1099/mic.0.040071-0
The integral membrane FtsW protein and peptidoglycan synthase PBP3 form a subcomplex in Escherichia coli.
Ogasawara H, Yamamoto K, Ishihama A
FEMS Microbiol Lett. 2010 Nov;312(2):160-8. doi: 10.1111/j.1574-6968.2010.02112.x. Epub 2010 Sep 27.
Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli.
Li Y, Stewart NK, Berger AJ, Vos S, Schoeffler AJ, Berger JM, Chait BT, Oakley MG
Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18832-7. doi: 10.1073/pnas.1008678107. Epub 2010 Oct 4.
Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.
Thein M, Sauer G, Paramasivam N, Grin I, Linke D.
J Proteome Res. 2010
Efficient subfractionation of gram-negative bacteria for proteomics studies.
Villegas JM, Volentini SI, Rintoul MR, Rapisarda VA
Arch Biochem Biophys. 2011 Jan 15;505(2):155-9. doi: 10.1016/j.abb.2010.10.001. Epub 2010 Oct 8.
Amphipathic C-terminal region of Escherichia coli NADH dehydrogenase-2 mediates membrane localization.
Bordes P, Lavatine L, Phok K, Barriot R, Boulanger A, Castanie-Cornet MP, Dejean G, Lauber E, Becker A, Arlat M, Gutierrez C
J Bacteriol. 2011 Jan;193(1):246-64. doi: 10.1128/JB.00884-10. Epub 2010 Oct 22.
Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity.
Albrecht R, Zeth K
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Dec 1;66(Pt 12):1586-90. doi: 10.1107/S1744309110034160. Epub 2010 Nov 25.
Crystallization and preliminary X-ray data collection of the Escherichia coli lipoproteins BamC, BamD and BamE.
Typas A, Banzhaf M, van den Berg van Saparoea B, Verheul J, Biboy J, Nichols RJ, Zietek M, Beilharz K, Kannenberg K, von Rechenberg M, Breukink E, den Blaauwen T, Gross CA, Vollmer W
Cell. 2010 Dec 23;143(7):1097-109. doi: 10.1016/j.cell.2010.11.038.
Regulation of peptidoglycan synthesis by outer-membrane proteins.
Maddalo G, Stenberg-Bruzell F, Gotzke H, Toddo S, Bjorkholm P, Eriksson H, Chovanec P, Genevaux P, Lehtio J, Ilag LL, Daley DO
J Proteome Res. 2011 Apr 1;10(4):1848-59. doi: 10.1021/pr101105c. Epub 2011 Feb 18.
Systematic analysis of native membrane protein complexes in Escherichia coli.
Cowles CE, Li Y, Semmelhack MF, Cristea IM, Silhavy TJ
Mol Microbiol. 2011 Mar;79(5):1168-81. doi: 10.1111/j.1365-2958.2011.07539.x
The free and bound forms of Lpp occupy distinct subcellular locations in Escherichia coli.
Heuck A, Schleiffer A, Clausen T
J Mol Biol. 2011 Mar 11;406(5):659-66. doi: 10.1016/j.jmb.2011.01.002. Epub 2011 Jan 12.
Augmenting beta-augmentation: structural basis of how BamB binds BamA and may support folding of outer membrane proteins.
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