STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies


Pubmed ID
First Author
Year
Publication Title
Relevant Protein
Metzger LE 4th, Raetz CR.
Biochemistry. 2009
Purification and characterization of the lipid A disaccharide synthase (LpxB) from Escherichia coli, a peripheral membrane protein.
Hardy SJ, Randall LL
Science. 1991 Jan 25;251(4992):439-43
A kinetic partitioning model of selective binding of nonnative proteins by the bacterial chaperone SecB.
Diestra E, Cayrol B, Arluison V, Risco C
PLoS One. 2009 Dec 14;4(12):e8301. doi: 10.1371/journal.pone.0008301.
Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane.
Hsieh CW, Lin TY, Lai HM, Lin CC, Hsieh TS, Shih YL
Mol Microbiol. 2010 Jan;75(2):499-512. doi: 10.1111/j.1365-2958.2009.07006.x. Epub 2009 Dec 16.
Direct MinE-membrane interaction contributes to the proper localization of MinDE in E. coli.
Lippa AM, Goulian M
PLoS Genet. 2009 Dec;5(12):e1000788. doi: 10.1371/journal.pgen.1000788
Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide.
Defeu Soufo HJ, Reimold C, Linne U, Knust T, Gescher J, Graumann PL
Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):3163-8. doi: 10.1073/pnas.0911979107. Epub 2010 Jan 28.
Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein.
van den Ent F, Johnson CM, Persons L, de Boer P, Lowe J
EMBO J. 2010 Mar 17;29(6):1081-90. doi: 10.1038/emboj.2010.9. Epub 2010 Feb 18.
Bacterial actin MreB assembles in complex with cell shape protein RodZ.
Hwang J, Inouye M
J Bacteriol. 2010 Apr;192(8):2277-83. doi: 10.1128/JB.00045-10. Epub 2010 Feb 19.
Interaction of an essential Escherichia coli GTPase, Der, with the 50S ribosome via the KH-like domain.
O'Daniel PI, Zajicek J, Zhang W, Shi Q, Fisher JF, Mobashery S
J Am Chem Soc. 2010 Mar 31;132(12):4110-8. doi: 10.1021/ja9094445.
Elucidation of the structure of the membrane anchor of penicillin-binding protein 5 of Escherichia coli.
Boehm A, Kaiser M, Li H, Spangler C, Kasper CA, Ackermann M, Kaever V, Sourjik V, Roth V, Jenal U
Cell. 2010 Apr 2;141(1):107-16. doi: 10.1016/j.cell.2010.01.018. Epub 2010 Mar 18.
Second messenger-mediated adjustment of bacterial swimming velocity.
Ross P, Mayer R, Benziman M
Microbiol Rev. 1991 Mar;55(1):35-58.
Cellulose biosynthesis and function in bacteria.
Korea CG, Badouraly R, Prevost MC, Ghigo JM, Beloin C
Environ Microbiol. 2010 Jul;12(7):1957-77. doi: 10.1111/j.1462-2920.2010.02202.x. Epub 2010 Mar 23.
Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities.
Paul K, Nieto V, Carlquist WC, Blair DF, Harshey RM
Mol Cell. 2010 Apr 9;38(1):128-39. doi: 10.1016/j.molcel.2010.03.001. Epub 2010 Mar 25.
The c-di-GMP binding protein YcgR controls flagellar motor direction and speed to affect chemotaxis by a "backstop brake" mechanism.
Galli E, Gerdes K
Mol Microbiol. 2010 Jun;76(6):1514-26. doi: 10.1111/j.1365-2958.2010.07183.x. Epub 2010 May 11.
Spatial resolution of two bacterial cell division proteins: ZapA recruits ZapB to the inner face of the Z-ring.
Alexeeva S, Gadella TW Jr, Verheul J, Verhoeven GS, den Blaauwen T
Mol Microbiol. 2010 Jul;77(2):384-98. doi: 10.1111/j.1365-2958.2010.07211.x
Direct interactions of early and late assembling division proteins in Escherichia coli cells resolved by FRET.
Ludwig A, Völkerink G, von Rhein C, Bauer S, Maier E, Bergmann B, Goebel W, Benz R
J Bacteriol. 2010 Aug;192(15):4001-11. doi: 10.1128/JB.01283-09
Mutations affecting export and activity of cytolysin A from Escherichia coli.
Pan JY, Li H, Ma Y, Chen P, Zhao P, Wang SY, Peng XX
J Proteome Res. 2010 Jul 2;9(7):3730-40. doi: 10.1021/pr100301f.
Complexome of Escherichia coli envelope proteins under normal physiological conditions.
Dhamdhere G, Zgurskaya HI
Mol Microbiol. 2010 Aug;77(3):743-54. doi: 10.1111/j.1365-2958.2010.07245.x. Epub 2010 Jun 1.
Metabolic shutdown in Escherichia coli cells lacking the outer membrane channel TolC.
Potluri L, Karczmarek A, Verheul J, Piette A, Wilkin JM, Werth N, Banzhaf M, Vollmer W, Young KD, Nguyen-Disteche M, den Blaauwen T
Mol Microbiol. 2010 Jul;77(2):300-23. doi: 10.1111/j.1365-2958.2010.07205.x. Epub 2010 Jun 7.
Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment.
Huang WL, Wang YR, Ko TP, Chia CY, Huang KF, Wang AH
J Mol Biol. 2010 Aug 20;401(3):374-88. doi: 10.1016/j.jmb.2010.06.012. Epub 2010 Jun 15.
Crystal structure and functional analysis of the glutaminyl cyclase from Xanthomonas campestris.
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