STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Minamino T, Yamaguchi S, Macnab RM
J Bacteriol. 2000 Jun;182(11):3029-36.
Interaction between FliE and FlgB, a proximal rod component of the flagellar basal body of Salmonella.
Koronakis V, Sharff A, Koronakis E, Luisi B, Hughes C
Nature. 2000 Jun 22;405(6789):914-9
Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export.
Agar JN, Krebs C, Frazzon J, Huynh BH, Dean DR, Johnson MK
Biochemistry. 2000 Jul 11;39(27):7856-62.
IscU as a scaffold for iron-sulfur cluster biosynthesis: sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU.
Keyhani N, Rodgers ME, Demeler B, Hansen JC, Roseman S
J Biol Chem. 2000 Oct 20;275(42):33110-5.
Analytical sedimentation of the IIAChb and IIBChb proteins of the Escherichia coli N,N'-diacetylchitobiose phosphotransferase system. Demonstration of a model phosphotransfer transition state complex.
Dym O, Pratt EA, Ho C, Eisenberg D
Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9413-8.
The crystal structure of D-lactate dehydrogenase, a peripheral membrane respiratory enzyme.
Abramson J, Riistama S, Larsson G, Jasaitis A, Svensson-Ek M, Laakkonen L, Puustinen A, Iwata S, Wikström M
Nat Struct Biol. 2000 Oct;7(10):910-7
The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site.
Spratt BG
Proc Natl Acad Sci U S A. 1975 Aug;72(8):2999-3003.
Distinct penicillin binding proteins involved in the division, elongation, and shape of Escherichia coli K12.
Fu D, Libson A, Miercke LJ, Weitzman C, Nollert P, Krucinski J, Stroud RM
Science. 2000 Oct 20;290(5491):481-6
Structure of a glycerol-conducting channel and the basis for its selectivity.
van der Rest ME, Frank C, Molenaar D
J Bacteriol. 2000 Dec;182(24):6892-9.
Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Escherichia coli.
Francetic O, Belin D, Badaut C, Pugsley AP
EMBO J. 2000 Dec 15;19(24):6697-703.
Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion.
Zogaj X, Nimtz M, Rohde M, Bokranz W, Romling U
Mol Microbiol. 2001 Mar;39(6):1452-63.
The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix.
Jayasinghe S, Hristova K, White SH
Protein Sci. 2001 Feb;10(2):455-8
MPtopo: A database of membrane protein topology.
Izutsu K, Wada C, Komine Y, Sako T, Ueguchi C, Nakura S, Wada A
J Bacteriol. 2001 May;183(9):2765-73.
Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase.
Hwang J, Inouye M
J Biol Chem. 2001 Aug 17;276(33):31415-21. Epub 2001 May 31.
An essential GTPase, der, containing double GTP-binding domains from Escherichia coli and Thermotoga maritima.
Alba BM, Zhong HJ, Pelayo JC, Gross CA
Mol Microbiol. 2001 Jun;40(6):1323-33.
degS (hhoB) is an essential Escherichia coli gene whose indispensable function is to provide sigma (E) activity.
Ghosh P, Ishihama A, Chatterji D
Eur J Biochem. 2001 Sep;268(17):4621-7.
Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly.
Vandeputte-Rutten L, Kramer RA, Kroon J, Dekker N, Egmond MR, Gros P
EMBO J. 2001 Sep 17;20(18):5033-9
Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site.
Meganathan R
FEMS Microbiol Lett. 2001 Sep 25;203(2):131-9.
Ubiquinone biosynthesis in microorganisms.
Chen JC, Beckwith J
Mol Microbiol. 2001 Oct;42(2):395-413.
FtsQ, FtsL and FtsI require FtsK, but not FtsN, for co-localization with FtsZ during Escherichia coli cell division.
Koch HG, Moser M, Schimz KL, Muller M
J Biol Chem. 2002 Feb 22;277(8):5715-8
The integration of YidC into the cytoplasmic membrane of Escherichia coli requires the signal recognition particle, SecA and SecYEG.
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