STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Cipolla L, Polissi A, Airoldi C, Galliani P, Sperandeo P, Nicotra F
Curr Drug Discov Technol. 2009 Mar;6(1):19-33.
The Kdo biosynthetic pathway toward OM biogenesis as target in antibacterial drug design and development.
Vertommen D, Ruiz N, Leverrier P, Silhavy TJ, Collet JF
Proteomics. 2009 May;9(9):2432-43. doi: 10.1002/pmic.200800794.
Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics.
Prieto AI, Hernandez SB, Cota I, Pucciarelli MG, Orlov Y, Ramos-Morales F, Garcia-del Portillo F, Casadesus J
J Bacteriol. 2009 Jun;191(11):3615-22. doi: 10.1128/JB.01592-08. Epub 2009 Apr 3.
Roles of the outer membrane protein AsmA of Salmonella enterica in the control of marRAB expression and invasion of epithelial cells.
Hizukuri Y, Morton JF, Yakushi T, Kojima S, Homma M
J Biochem. 2009 Aug;146(2):219-29. doi: 10.1093/jb/mvp061
The peptidoglycan-binding (PGB) domain of the Escherichia coli pal protein can also function as the PGB domain in E. coli flagellar motor protein MotB.
Gupta V, Sendra M, Naik SG, Chahal HK, Huynh BH, Outten FW, Fontecave M, Ollagnier de Choudens S
J Am Chem Soc. 2009 May 6;131(17):6149-53. doi: 10.1021/ja807551e.
Native Escherichia coli SufA, coexpressed with SufBCDSE, purifies as a [2Fe-2S] protein and acts as an Fe-S transporter to Fe-S target enzymes.
Neumann M, Mittelstadt G, Iobbi-Nivol C, Saggu M, Lendzian F, Hildebrandt P, Leimkuhler S
FEBS J. 2009 May;276(10):2762-74. doi: 10.1111/j.1742-4658.2009.07000.x. Epub 2009 Apr 1.
A periplasmic aldehyde oxidoreductase represents the first molybdopterin cytosine dinucleotide cofactor containing molybdo-flavoenzyme from Escherichia coli.
Guymer D, Maillard J, Sargent F
Arch Microbiol. 2009 Jun;191(6):519-28. doi: 10.1007/s00203-009-0478-7. Epub 2009 May 5.
A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12.
Mueller M, Grauschopf U, Maier T, Glockshuber R, Ban N
Nature. 2009 Jun 4;459(7247):726-30. doi: 10.1038/nature08026.
The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism.
Zhang J, Xing X, Herr AB, Bell CE
Structure. 2009 May 13;17(5):690-702. doi: 10.1016/j.str.2009.03.008.
Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.
Sung MT, Lai YT, Huang CY, Chou LY, Shih HW, Cheng WC, Wong CH, Ma C
Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8824-9. doi: 10.1073/pnas.0904030106. Epub 2009 May 19.
Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli.
Bodelon G, Marin E, Fernandez LA
J Bacteriol. 2009 Aug;191(16):5169-79. doi: 10.1128/JB.00458-09. Epub 2009 Jun 12.
Role of periplasmic chaperones and BamA (YaeT/Omp85) in folding and secretion of intimin from enteropathogenic Escherichia coli strains.
Engl C, Jovanovic G, Lloyd LJ, Murray H, Spitaler M, Ying L, Errington J, Buck M
Mol Microbiol. 2009 Aug;73(3):382-96. doi: 10.1111/j.1365-958.2009.06776.x. Epub 2009 Jun 22.
In vivo localizations of membrane stress controllers PspA and PspG in Escherichia coli.
Ramasamy SK, Clemons WM Jr
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Aug 1;65(Pt 8):746-50. doi: 10.1107/S1744309109023811. Epub 2009 Jul 21.
Structure of the twin-arginine signal-binding protein DmsD from Escherichia coli.
Su CC, Yang F, Long F, Reyon D, Routh MD, Kuo DW, Mokhtari AK, Van Ornam JD, Rabe KL, Hoy JA, Lee YJ, Rajashankar KR, Yu EW
J Mol Biol. 2009 Oct 23;393(2):342-55. doi: 10.1016/j.jmb.2009.08.029
Crystal structure of the membrane fusion protein CusB from Escherichia coli.
Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV
J Biol Chem. 2009 Oct 30;284(44):30594-603. doi: 10.1074/jbc.M109.012278. Epub 2009 Sep 2.
The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase.
Hemm MR, Paul BJ, Miranda-RĂ­os J, Zhang A, Soltanzad N, Storz G
J Bacteriol. 2010 Jan;192(1):46-58
Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies.
Martinez-Hackert E, Hendrickson WA
Cell. 2009 Sep 4;138(5):923-34. doi: 10.1016/j.cell.2009.07.044.
Promiscuous substrate recognition in folding and assembly activities of the trigger factor chaperone.
P69741 P0AB71 P0AB77 P69776 P0ABB0 P0A9K3 P0A9M0 P0A9M8 P0ABH7 P0AFD1 P77791 P0A9P0 P02931 P39353 P0A9P6 P0A9Q7 P0ABK5 P0AFG3 P0AFG6 P69828 P0A9S3 P0A9S5 P0AFG8 P06612 Q46829 P0A9W3 P0AFI7 P71298 P0A9X4 Q46893 P41409 P00452 P0A698 P0AA25 P27302 P0AFY8 Q47146 P0AAI3 P27306 P0AC38 P0AC41 P0AG82 P0ACB0 P0ACB7 P00561 P28904 P0AGD7 P0AGE9 P0A6F1 P0A6F3 P00579 P45425 P0A6J5 P0AGJ5 P06959 P30958 P45578 P0A6Q3 P0ACJ8 P0C8J6 P0A6Q6 P0C8J8 P08200 P0CG19 P0A6V8 P0ACP1 P0A705 P0A707 P0A717 P04079 P0A763 P32132 P0A786 P0A7E5 P13029 P32664 P0A7F6 P0A7G6 P06987 P33029 P0A7Y0 P76373 P33136 P0A836 P0A853 P0A870 P0A8J4 P0A8M0 P0A8M3 P06993 P16659 P0ADQ2 P17169 P06996 P76558 P33599 P08997 P33602 P0A8T7 P17846 P17952 P0A8V2 P18335 P09053 P60785 P00957 P36659 P36672 P00959 P21170 P21177 P36683 P00960 P21179 P61889 P36979 P63389 P0A910 P21888 P22106 P00968 P23003 P23331 P05055 P23538 P23830 P0A917 P37330 P09169 P05523 P0AEK4 P24182 P37759 P0AES4 P0AES6 P38038 P07464 P09373 P25519 P0A998 P0A9B2 P0A9C5 P25553
Carabetta VJ, Mohanty BK, Kushner SR, Silhavy TJ
J Bacteriol. 2009 Nov;191(22):6812-21. doi: 10.1128/JB.00870-09. Epub 2009 Sep18.
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli.
Waksman G, Hultgren SJ
Nat Rev Microbiol. 2009 Nov;7(11):765-74. doi: 10.1038/nrmicro2220. Epub 2009 Oct 12.
Structural biology of the chaperone-usher pathway of pilus biogenesis.
Arends SJ, Williams K, Scott RJ, Rolong S, Popham DL, Weiss DS
J Bacteriol. 2010 Jan;192(1):242-55. doi: 10.1128/JB.01244-09
Discovery and characterization of three new Escherichia coli septal ring proteins that contain a SPOR domain: DamX, DedD, and RlpA.
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