STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Forest KT
Nat Struct Mol Biol. 2008 May;15(5):428-30. doi: 10.1038/nsmb0508-428.
The type II secretion arrowhead: the structure of GspI-GspJ-GspK.
Futai M, Kimura H
J Biol Chem. 1977 Aug 25;252(16):5820-7.
Inducible membrane-bound L-lactate dehydrogenase from Escherichia coli. Purification and properties.
Stymest KH, Klappa P
FEBS J. 2008 Jul;275(13):3470-9. doi: 10.1111/j.1742-4658.2008.06493.x. Epub 2008 May 22.
The periplasmic peptidyl prolyl cis-trans isomerases PpiD and SurA have partially overlapping substrate specificities.
Park JT, Uehara T
Microbiol Mol Biol Rev. 2008 Jun;72(2):211-27, table of contents. doi: 10.1128/MMBR.00027-07.
How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan).
Preumont A, Snoussi K, Stroobant V, Collet JF, Van Schaftingen E
J Biol Chem. 2008 Sep 12;283(37):25238-46. doi: 10.1074/jbc.M804122200. Epub 2008 Jun 30.
Molecular identification of pseudouridine-metabolizing enzymes.
Gu R, Li M, Su CC, Long F, Routh MD, Yang F, McDermott G, Yu EW.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jul 1;64(Pt 7):584-8. doi: 10.1107/S1744309108016035
Conformational change of the AcrR regulator reveals a possible mechanism of induction.
Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, Ocampo A, Rudd KE, Storz G
Mol Microbiol. 2008 Dec;70(5):1076-93. doi: 10.1111/j.1365-2958.2008.06394.x. Epub 2008 Aug 14.
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs.
Rea D, Hovington R, Rakus JF, Gerlt JA, Fülöp V, Bugg TD, Roper DI
Biochemistry. 2008 Sep 23;47(38):9955-65. doi: 10.1021/bi800943g
Crystal structure and functional assignment of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12.
Hengge R
Adv Exp Med Biol. 2008;631:40-53. doi: 10.1007/978-0-387-78885-2_4.
The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli.
Khemici V, Poljak L, Luisi BF, Carpousis AJ
Mol Microbiol. 2008 Nov;70(4):799-813. doi: 10.1111/j.1365-2958.2008.06454.x. Epub 2008 Oct 2.
The RNase E of Escherichia coli is a membrane-binding protein.
Neumann P, Weidner A, Pech A, Stubbs MT, Tittmann K
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17390-5. doi: 10.1073/pnas.0805027105. Epub 2008 Nov 6.
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.
Shiomi D, Sakai M, Niki H
EMBO J. 2008 Dec 3;27(23):3081-91. doi: 10.1038/emboj.2008.234. Epub 2008 Nov 13.
Determination of bacterial rod shape by a novel cytoskeletal membrane protein.
Tao K
FEMS Microbiol Lett. 2008 Dec;289(1):41-5. doi: 10.1111/j.1574-6968.2008.01372.x.
Subcellular localization and in vivo oxidation-reduction kinetics of thiol peroxidase in Escherichia coli.
Bendezu FO, Hale CA, Bernhardt TG, de Boer PA
EMBO J. 2009 Feb 4;28(3):193-204. doi: 10.1038/emboj.2008.264. Epub 2008 Dec 11.
RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli.
Heermann R, Weber A, Mayer B, Ott M, Hauser E, Gabriel G, Pirch T, Jung K
J Mol Biol. 2009 Feb 13;386(1):134-48. doi: 10.1016/j.jmb.2008.12.007. Epub 2008 Dec 11.
The universal stress protein UspC scaffolds the KdpD/KdpE signaling cascade of Escherichia coli under salt stress.
Hemm MR, Paul BJ, Schneider TD, Storz G, Rudd KE
Mol Microbiol. 2008 Dec;70(6):1487-501. doi: 10.1111/j.1365-2958.2008.06495.x.
Small membrane proteins found by comparative genomics and ribosome binding site models.
Nenninger AA, Robinson LS, Hultgren SJ
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):900-5. doi: 10.1073/pnas.0812143106
Localized and efficient curli nucleation requires the chaperone-like amyloid assembly protein CsgF.
Dalal K, Nguyen N, Alami M, Tan J, Moraes TF, Lee WC, Maurus R, Sligar SS, Brayer GD, Duong F
J Biol Chem. 2009 Mar 20;284(12):7897-902. doi: 10.1074/jbc.M808305200. Epub 2009 Jan 12.
Structure, binding, and activity of Syd, a SecY-interacting protein.
Mitchell KA, Szabo G, de S Otero A
Biochim Biophys Acta. 2009 Mar;1793(3):469-76. doi: 10.1016/j.bbamcr.2008.12.009. Epub 2008 Dec 25.
Direct binding of cytosolic NDP kinases to membrane lipids is regulated by nucleotides.
Yum S, Xu Y, Piao S, Sim SH, Kim HM, Jo WS, Kim KJ, Kweon HS, Jeong MH, Jeon H, Lee K, Ha NC
J Mol Biol. 2009 Apr 17;387(5):1286-97. doi: 10.1016/j.jmb.2009.02.048. Epub 2009 Feb 28.
Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump.
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