STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Hakoshima T, Ichihara H
Methods Enzymol. 2007;422:288-304.
Structure of SixA, a histidine protein phosphatase of the ArcB histidine-containing phosphotransfer domain in Escherichia coli.
Wang Y, Stieglitz KA, Bubunenko M, Court DL, Stec B, Roberts MF
J Biol Chem. 2007 Sep 14;282(37):26989-96. Epub 2007 Jul 25.
The structure of the R184A mutant of the inositol monophosphatase encoded by suhB and implications for its functional interactions in Escherichia coli.
Maeda T, Sanchez-Torres V, Wood TK
Appl Microbiol Biotechnol. 2007 Oct;76(5):1035-42. Epub 2007 Aug 1.
Escherichia coli hydrogenase 3 is a reversible enzyme possessing hydrogen uptake and synthesis activities.
Fujisawa M, Ito M, Krulwich TA
Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13289-94. Epub 2007 Aug 6.
Three two-component transporters with channel-like properties have monovalent cation/proton antiport activity.
Schmidt O, Schuenemann VJ, Hand NJ, Silhavy TJ, Martin J, Lupas AN, Djuranovic S
J Mol Biol. 2007 Sep 28;372(4):894-905. Epub 2007 Jul 21.
prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli.
Kobayashi R, Suzuki T, Yoshida M
Mol Microbiol. 2007 Oct;66(1):100-9. Epub 2007 Aug 28.
Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes.
Parlitz R, Eitan A, Stjepanovic G, Bahari L, Bange G, Bibi E, Sinning I
J Biol Chem. 2007 Nov 2;282(44):32176-84
Escherichia coli signal recognition particle receptor FtsY contains an essential and autonomous membrane-binding amphipathic helix.
Lee EY, Bang JY, Park GW, Choi DS, Kang JS, Kim HJ, Park KS, Lee JO, Kim YK, Kwon KH, Kim KP, Gho YS
Proteomics. 2007 Sep;7(17):3143-53.
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli.
Maillard J, Spronk CA, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F
Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15641-6. Epub 2007 Sep 27.
Structural diversity in twin-arginine signal peptide-binding proteins.
Weiner JH, Li L
Biochim Biophys Acta. 2008 Sep;1778(9):1698-713. Epub 2007 Aug 11.
Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis.
Sklar JG, Wu T, Kahne D, Silhavy TJ
Genes Dev. 2007 Oct 1;21(19):2473-84.
Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli.
Wadler CS, Vanderpool CK
Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20454-9
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide.
Lee KH, Park JH, Kim TY, Kim HU, Lee SY
Mol Syst Biol. 2007;3:149
Systems metabolic engineering of Escherichia coli for L-threonine production.
Ge C, He C
Curr Microbiol. 2008 Feb;56(2):122-7. doi: 10.1007/s00284-007-9081-9. Epub 2008 Jan 3.
Regulation of the type II secretion structural gene xpsE in Xanthomonas campestris Pathovar campestris by the global transcription regulator Clp.
Shiomi D, Margolin W
Mol Microbiol. 2008 Feb;67(3):558-69. doi: 10.1111/j.1365-2958.2007.06085.x.
Compensation for the loss of the conserved membrane targeting sequence of FtsA provides new insights into its function.
Laubacher ME, Ades SE
J Bacteriol. 2008 Mar;190(6):2065-74. doi: 10.1128/JB.01740-07. Epub 2008 Jan 11.
The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance.
Yanez ME, Korotkov KV, Abendroth J, Hol WG
J Mol Biol. 2008 Mar 14;377(1):91-103. doi: 10.1016/j.jmb.2007.08.041. Epub 2007 Aug 23.
Structure of the minor pseudopilin EpsH from the Type 2 secretion system of Vibrio cholerae.
Hayden JD, Ades SE
PLoS One. 2008 Feb 6;3(2):e1573. doi: 10.1371/journal.pone.0001573.
The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli.
Weiche B, Burk J, Angelini S, Schiltz E, Thumfart JO, Koch HG
J Mol Biol. 2008 Mar 28;377(3):761-73. doi: 10.1016/j.jmb.2008.01.040. Epub 2008 Jan 26.
A cleavable N-terminal membrane anchor is involved in membrane binding of the Escherichia coli SRP receptor.
Ito K
Curr Opin Struct Biol. 2008 Aug;18(4):450-8. doi: 10.1016/ Epub
The disulfide bond formation (Dsb) system.
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