STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Malinverni JC, Werner J, Kim S, Sklar JG, Kahne D, Misra R, Silhavy TJ
Mol Microbiol. 2006 Jul;61(1):151-64.
YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli.
Lasserre JP, Beyne E, Pyndiah S, Lapaillerie D, Claverol S, Bonneu M
Electrophoresis. 2006 Aug;27(16):3306-21.
A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis.
Hwang J, Inouye M
Mol Microbiol. 2006 Sep;61(6):1660-72. Epub 2006 Aug 23.
The tandem GTPase, Der, is essential for the biogenesis of 50S ribosomal subunits in Escherichia coli.
Volpon L, Young CR, Matte A, Gehring K
Protein Sci. 2006 Oct;15(10):2435-41. Epub 2006 Sep 8.
NMR structure of the enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system and its interaction with GatA.
Petrushenko ZM, Lai CH, Rybenkov VV
J Biol Chem. 2006 Nov 10;281(45):34208-17. Epub 2006 Sep 18.
Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB.
Shiraishi K, Imai Y, Yoshizaki S, Tadaki T, Ogata Y, Ikeda H
Genes Genet Syst. 2006 Aug;81(4):291-7.
The role of UvrD in RecET-mediated illegitimate recombination in Escherichia coli.
Wang Y, Zhang Y, Ha Y
Nature. 2006 Nov 9;444(7116):179-80
Crystal structure of a rhomboid family intramembrane protease.
Sperandeo P, Cescutti R, Villa R, Di Benedetto C, Candia D, Deho G, Polissi A
J Bacteriol. 2007 Jan;189(1):244-53. Epub 2006 Oct 20.
Characterization of lptA and lptB, two essential genes implicated in lipopolysaccharide transport to the outer membrane of Escherichia coli.
Xie K, Kiefer D, Nagler G, Dalbey RE, Kuhn A
Biochemistry. 2006 Nov 7;45(44):13401-8
Different regions of the nonconserved large periplasmic domain of Escherichia coli YidC are involved in the SecF interaction and membrane insertase activity.
Inaba K, Murakami S, Suzuki M, Nakagawa A, Yamashita E, Okada K, Ito K
Cell. 2006 Nov 17;127(4):789-801
Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.
Arts J, van Boxtel R, Filloux A, Tommassen J, Koster M
J Bacteriol. 2007 Mar;189(5):2069-76. Epub 2006 Dec 15.
Export of the pseudopilin XcpT of the Pseudomonas aeruginosa type II secretion system via the signal recognition particle-Sec pathway.
Castanie-Cornet MP, Treffandier H, Francez-Charlot A, Gutierrez C, Cam K
Microbiology. 2007 Jan;153(Pt 1):238-46.
The glutamate-dependent acid resistance system in Escherichia coli: essential and dual role of the His-Asp phosphorelay RcsCDB/AF.
Tullman-Ercek D, DeLisa MP, Kawarasaki Y, Iranpour P, Ribnicky B, Palmer T, Georgiou G
J Biol Chem. 2007 Mar 16;282(11):8309-16. Epub 2007 Jan 11.
Export pathway selectivity of Escherichia coli twin arginine translocation signal peptides.
Yamagata A, Tainer JA
EMBO J. 2007 Feb 7;26(3):878-90. Epub 2007 Jan 25.
Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
Watt RM, Wang J, Leong M, Kung HF, Cheah KS, Liu D, Danchin A, Huang JD
Nucleic Acids Res. 2007;35(6):e37. Epub 2007 Jan 31.
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes.
Lee CR, Cho SH, Yoon MJ, Peterkofsky A, Seok YJ
Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):4124-9. Epub 2007 Feb 8.
Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA.
Small E, Marrington R, Rodger A, Scott DJ, Sloan K, Roper D, Dafforn TR, Addinall SG
J Mol Biol. 2007 May 25;369(1):210-21. Epub 2007 Mar 19.
FtsZ polymer-bundling by the Escherichia coli ZapA orthologue, YgfE, involves a conformational change in bound GTP.
Crane FL
Mitochondrion. 2007 Jun;7 Suppl:S2-7
Discovery of ubiquinone (coenzyme Q) and an overview of function.
Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW
Mol Cell Proteomics. 2007 Sep;6(9):1527-50. Epub 2007 Apr 19.
Consequences of membrane protein overexpression in Escherichia coli.
Miyamoto S, Tokuda H
Biochim Biophys Acta. 2007 Jul;1768(7):1848-54. Epub 2007 Apr 14.
Diverse effects of phospholipids on lipoprotein sorting and ATP hydrolysis by the ABC transporter LolCDE complex.
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