STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Stenberg F, Chovanec P, Maslen SL, Robinson CV, Ilag LL, von Heijne G, Daley DO
J Biol Chem. 2005 Oct 14;280(41):34409-19. Epub 2005 Aug 3.
Protein complexes of the Escherichia coli cell envelope.
Ferris HU, Furukawa Y, Minamino T, Kroetz MB, Kihara M, Namba K, Macnab RM
J Biol Chem. 2005 Dec 16;280(50):41236-42. Epub 2005 Oct 24.
FlhB regulates ordered export of flagellar components via autocleavage mechanism.
Sauter M, Bohm R, Bock A
Mol Microbiol. 1992 Jun;6(11):1523-32.
Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli.
Gully D, Bouveret E
Proteomics. 2006 Jan;6(1):282-93.
A protein network for phospholipid synthesis uncovered by a variant of the tandem affinity purification method in Escherichia coli.
Murphy GE, Jensen GJ
Structure. 2005 Dec;13(12):1765-73.
Electron cryotomography of the E. coli pyruvate and 2-oxoglutarate dehydrogenase complexes.
Baars L, Ytterberg AJ, Drew D, Wagner S, Thilo C, van Wijk KJ, de Gier JW
J Biol Chem. 2006 Apr 14;281(15):10024-34. Epub 2005 Dec 13.
Defining the role of the Escherichia coli chaperone SecB using comparative proteomics.
Xu C, Lin X, Ren H, Zhang Y, Wang S, Peng X
Proteomics. 2006 Jan;6(2):462-73.
Analysis of outer membrane proteome of Escherichia coli related to resistance to ampicillin and tetracycline.
Kruse T, Blagoev B, Løbner-Olesen A, Wachi M, Sasaki K, Iwai N, Mann M, Gerdes K
Genes Dev. 2006 Jan 1;20(1):113-24
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL
Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.
Hong H, Patel DR, Tamm LK, van den Berg B
J Biol Chem. 2006 Mar 17;281(11):7568-77
The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
Robinson LS, Ashman EM, Hultgren SJ, Chapman MR
Mol Microbiol. 2006 Feb;59(3):870-81
Secretion of curli fibre subunits is mediated by the outer membrane-localized CsgG protein.
Brombacher E, Baratto A, Dorel C, Landini P
J Bacteriol. 2006 Mar;188(6):2027-37.
Gene expression regulation by the Curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion.
Marani P, Wagner S, Baars L, Genevaux P, de Gier JW, Nilsson I, Casadio R, von Heijne G
Protein Sci. 2006 Apr;15(4):884-9
New Escherichia coli outer membrane proteins identified through prediction and experimental verification.
Shiue SJ, Kao KM, Leu WM, Chen LY, Chan NL, Hu NT
EMBO J. 2006 Apr 5;25(7):1426-35. Epub 2006 Mar 9.
XpsE oligomerization triggered by ATP binding, not hydrolysis, leads to its association with XpsL.
MacLachlan PR, Kadam SK, Sanderson KE
J Bacteriol. 1991 Nov;173(22):7151-63.
Cloning, characterization, and DNA sequence of the rfaLK region for lipopolysaccharide synthesis in Salmonella typhimurium LT2.
Yin Y, He X, Szewczyk P, Nguyen T, Chang G
Science. 2006 May 5;312(5774):741-4
Structure of the multidrug transporter EmrD from Escherichia coli.
Barnhart MM, Chapman MR
Annu Rev Microbiol. 2006;60:131-47.
Curli biogenesis and function.
Palchevskiy V, Finkel SE
J Bacteriol. 2006 Jun;188(11):3902-10.
Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient.
Braun V, Mahren S, Sauter A
Biometals. 2006 Apr;19(2):103-13.
Gene regulation by transmembrane signaling.
Nishino K, Hsu FF, Turk J, Cromie MJ, Wosten MM, Groisman EA
Mol Microbiol. 2006 Aug;61(3):645-54. Epub 2006 Jun 27.
Identification of the lipopolysaccharide modifications controlled by the Salmonella PmrA/PmrB system mediating resistance to Fe(III) and Al(III).
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