STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Punginelli C, Ize B, Stanley NR, Stewart V, Sawers G, Berks BC, Palmer T
J Bacteriol. 2004 Sep;186(18):6311-5.
mRNA secondary structure modulates translation of Tat-dependent formate dehydrogenase N.
Khademi S, O'Connell J 3rd, Remis J, Robles-Colmenares Y, Miercke LJ, Stroud RM
Science. 2004 Sep 10;305(5690):1587-94
Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A.
Bashyam MD, Hasnain SE
Infect Genet Evol. 2004 Dec;4(4):301-8.
The extracytoplasmic function sigma factors: role in bacterial pathogenesis.
Yamamoto K, Hirao K, Oshima T, Aiba H, Utsumi R, Ishihama A
J Biol Chem. 2005 Jan 14;280(2):1448-56. Epub 2004 Nov 2.
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli.
Macnab RM
Biochim Biophys Acta. 2004 Nov 11;1694(1-3):207-17.
Type III flagellar protein export and flagellar assembly.
Prud'homme-Genereux A, Beran RK, Iost I, Ramey CS, Mackie GA, Simons RW
Mol Microbiol. 2004 Dec;54(5):1409-21.
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D
Microbiol Mol Biol Rev. 2004 Dec;68(4):692-744.
Type V protein secretion pathway: the autotransporter story.
Kawamoto H, Morita T, Shimizu A, Inada T, Aiba H
Genes Dev. 2005 Feb 1;19(3):328-38. Epub 2005 Jan 13.
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli.
Reid SJ, Abratt VR
Appl Microbiol Biotechnol. 2005 May;67(3):312-21. Epub 2005 Jan 20.
Sucrose utilisation in bacteria: genetic organisation and regulation.
Chou TF, Bieganowski P, Shilinski K, Cheng J, Brenner C, Wagner CR
J Biol Chem. 2005 Apr 15;280(15):15356-61. Epub 2005 Feb 9.
31P NMR and genetic analysis establish hinT as the only Escherchia coli purine nucleoside phosphoramidase and as essential for growth under high salt conditions.
Belunis CJ, Raetz CR
J Biol Chem. 1992 May 15;267(14):9988-97
Biosynthesis of endotoxins. Purification and catalytic properties of 3-deoxy-D-manno-octulosonic acid transferase from Escherichia coli.
Huber D, Boyd D, Xia Y, Olma MH, Gerstein M, Beckwith J
J Bacteriol. 2005 May;187(9):2983-91
Use of thioredoxin as a reporter to identify a subset of Escherichia coli signal sequences that promote signal recognition particle-dependent translocation.
Villa E, Balaeff A, Schulten K
Proc Natl Acad Sci U S A. 2005 May 10;102(19):6783-8. Epub 2005 Apr 29.
Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation.
Lopez-Campistrous A, Semchuk P, Burke L, Palmer-Stone T, Brokx SJ, Broderick G, Bottorff D, Bolch S, Weiner JH, Ellison MJ
Mol Cell Proteomics. 2005 Aug;4(8):1205-9. Epub 2005 May 19.
Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth.
Spelbrink RE, Kolkman A, Slijper M, Killian JA, de Kruijff B.
J Biol Chem. 2005
Detection and identification of stable oligomeric protein complexes in Escherichi coli inner membranes: a proteomics approach.
Coles M, Djuranovic S, Soding J, Frickey T, Koretke K, Truffault V, Martin J, Lupas AN
Structure. 2005 Jun;13(6):919-28.
AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.
Amarneh B, Vik SB
Cell Biochem Biophys. 2005;42(3):251-61.
Direct transfer of NADH from malate dehydrogenase to complex I in Escherichia coli.
Engels S, Ludwig C, Schweitzer JE, Mack C, Bott M, Schaffer S
Mol Microbiol. 2005 Jul;57(2):576-91.
The transcriptional activator ClgR controls transcription of genes involved in proteolysis and DNA repair in Corynebacterium glutamicum.
Hunte C, Screpanti E, Venturi M, Rimon A, Padan E, Michel H
Nature. 2005 Jun 30;435(7046):1197-202
Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH.
Kosinski J, Feder M, Bujnicki JM
BMC Bioinformatics. 2005 Jul 12;6:172.
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
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