STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Bernsel et al
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
FIMF_ECOLI
P08189
fimF
b4318 JW4281
Fimbrial extra-cellular peripheral OM protein (SEC through IM, chaperone usher export system over OM), FimF
Peripheral outer membrane protein facing the extra-cellular space
F4
Periplasm
Cell surface appendage (Experimental)
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
no
yes
FIMG_ECOLI
P08190
fimG
b4319 JW4282
Fimbrial extra-cellular peripheral OM protein (SEC through IM, chaperone usher export system over OM), FimG
Peripheral outer membrane protein facing the extra-cellular space
F4
Periplasm
Cell surface appendage (Experimental)
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
no
yes
FIMH_ECOLI
P08191
fimH
b4320 JW4283
Fimbrial extra-cellular peripheral OM protein (SEC through IM, chaperone usher export system over OM), Type 1 fimbrin D-mannose specific adhesin FimH
Peripheral outer membrane protein facing the extra-cellular space
F4
Fimbrium
Cell surface appendage (Experimental)
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
no
yes
FIMA1_ECOLI
P04128
fimA

pilA
b4314 JW4277
Fimbrial extra-cellular peripheral OM protein (SEC through IM, chaperone usher export system over OM), Type-1 protein, A chain FimA
Peripheral outer membrane protein facing the extra-cellular space
F4
Periplasm
Cell surface appendage (Experimental)
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
yes
yes
FIMD_ECOLI
P30130
fimD
b4317 JW5780
Fimbrial OM b-barrel protein (SEC through IM, chaperone usher export system in OM), FimD
Outer Membrane b-barrel protein
H
Cell outer membrane
Outer Membrane ??-barrel protein (Experimental)
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
yes
yes
FIMC_ECOLI
P31697
fimC
b4316 JW4279
Fimbrial periplasmic protein (SEC through IM), Chaperone FimC
Periplasmic
G
Secreted
Periplasmic (Experimental)
N/A
fimbriae
 
SEC
SurA
 
yes
yes
FIMI_ECOLI
P39264
fimI
b4315 JW5779
Fimbrial periplasmic protein (SEC through IM), Fimbrin-like FimI
Periplasmic
G
Fimbrium
Periplasmic
N/A
fimbriae
 
SEC
 
CU: Chaperone Usher export system
no
yes
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