STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Bernsel et al
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
KDSC_ECOLI
P0ABZ4
kdsC

yrbI yrbJ
b3198 JW3165
cytoplasmic peripheral IM protein, 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic (Experimental)
N/A
 
 
 
 
 
yes
yes
FABZ_ECOLI
P0A6Q6
fabZ

sefA yaeA
b0180 JW0175
cytoplasmic peripheral IM protein, 3-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic (Experimental)
N/A
 
TF
 
 
 
yes
yes
FADI_ECOLI
P76503
fadI

yfcY
b2342 JW2339
cytoplasmic peripheral IM protein, 3-ketoacyl-CoA thiolase FadI
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
UBID_ECOLI
P0AAB4
ubiD

yigC yigY
b3843 JW3819
cytoplasmic peripheral IM protein, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell membrane
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
FABG_ECOLI
P0AEK2
fabG
b1093 JW1079
cytoplasmic peripheral IM protein, 3-oxoacyl-(acyl-carrier-protein) reductase FabG
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
FABB_ECOLI
P0A953
fabB

fabC
b2323 JW2320
cytoplasmic peripheral IM protein, 3-oxoacyl-(acyl-carrier-protein) synthase 1 FabB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
FABF_ECOLI
P0AAI5
fabF

fabJ
b1095 JW1081
cytoplasmic peripheral IM protein, 3-oxoacyl-(acyl-carrier-protein) synthase 2 FabF
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HSLO_ECOLI
P0A6Y5
hslO

yrfI
b3401 JW5692
cytoplasmic peripheral IM protein, 33 kDa chaperonin HslO
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
MALQ_ECOLI
P15977
malQ

malA
b3416 JW3379
cytoplasmic peripheral IM protein, 4-alpha-glucanotransferase MalQ
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
GABT_ECOLI
P22256
gabT
b2662 JW2637
cytoplasmic peripheral IM protein, 4-aminobutyrate aminotransferase GabT
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ISPG_ECOLI
P62620
ispG

gcpE
b2515 JW2499
cytoplasmic peripheral IM protein, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RISB_ECOLI
P61714
ribE

ribH ybaF
b0415 JW0405
cytoplasmic peripheral IM protein, 6,7-dimethyl-8-ribityllumazine synthase RibE
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
6PGD_ECOLI
P00350
gnd
b2029 JW2011
cytoplasmic peripheral IM protein, 6-phosphogluconate dehydrogenase, decarboxylating Gnd
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CH60_ECOLI
P0A6F5
groL

groEL mopA
b4143 JW4103
cytoplasmic peripheral IM protein, 60 kDa chaperonin GroL
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
MODF_ECOLI
P31060
modF

phrA
b0760 JW0743
cytoplasmic peripheral IM protein, ABC transporter ATP-binding ModF
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane
Cytoplasmic
N/A
 
 
 
 
 
no
yes
UUP_ECOLI
P43672
uup

ycbH ycbI
b0949 JW0932
cytoplasmic peripheral IM protein, ABC transporter ATP-binding Uup
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
YADG_ECOLI
P36879
yadG
b0127 JW0123
cytoplasmic peripheral IM protein, ABC transporter ATP-binding YadG
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
YBBA_ECOLI
P0A9T8
ybbA
b0495 JW0484
cytoplasmic peripheral IM protein, ABC transporter ATP-binding YbbA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
YBIT_ECOLI
P0A9U3
ybiT
b0820 JW0804
cytoplasmic peripheral IM protein, ABC transporter ATP-binding YbiT
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
YDCT_ECOLI
P77795
ydcT
b1441 JW1436
cytoplasmic peripheral IM protein, ABC transporter ATP-binding YdcT
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
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