STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Bernsel et al
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
DBPA_ECOLI
P21693
dbpA
b1343 JW1337
cytoplasmic peripheral IM protein, ATP-dependent RNA helicase DbpA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
DEAD_ECOLI
P0A9P6
deaD

csdA mssB rhlD
b3162 JW5531
cytoplasmic peripheral IM protein, ATP-dependent RNA helicase DeaD
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
HRPA_ECOLI
P43329
hrpA
b1413 JW5905
cytoplasmic peripheral IM protein, ATP-dependent RNA helicase HrpA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RHLE_ECOLI
P25888
rhlE
b0797 JW0781
cytoplasmic peripheral IM protein, ATP-dependent RNA helicase RhlE
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
SRMB_ECOLI
P21507
srmB

rbaB rhlA
b2576 JW2560
cytoplasmic peripheral IM protein, ATP-dependent RNA helicase SrmB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
LSRA_ECOLI
P77257
lsrA

ego ydeX
b1513 JW1506
cytoplasmic peripheral IM protein, Autoinducer 2 import ATP-binding LsrA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane
Cytoplasmic
N/A
 
 
 
 
 
no
yes
GRCA_ECOLI
P68066
grcA

yfiD
b2579 JW2563
cytoplasmic peripheral IM protein, Autonomous glycyl radical cofactor GrcA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
AZUC_ECOLI
C1P605
azuC
b4663 JW1891.1
cytoplasmic peripheral IM protein, AzuC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane
-
N/A
 
 
 
 
 
no
yes
FTNB_ECOLI
P0A9A2
ftnB

yecI
b1902 JW1890
cytoplasmic peripheral IM protein, Bacterial non-heme ferritin-like protein FtnB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
WBBI_ECOLI
P37749
wbbI

yefG
b2034 JW2019
cytoplasmic peripheral IM protein, Beta-1,6-galactofuranosyltransferase WbbI WbbI
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
no
yes
BGLR_ECOLI
P05804
uidA

gurA gusA
b1617 JW1609
cytoplasmic peripheral IM protein, Beta-glucuronidase UidA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
no
yes
AK1H_ECOLI
P00561
thrA

thrA1 thrA2
b0002 JW0001
cytoplasmic peripheral IM protein, Bifunctional aspartokinase/homoserine dehydrogenase 1 ThrA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic (Experimental)
N/A
 
TF
 
 
 
yes
yes
AK2H_ECOLI
P00562
metL

metM
b3940 JW3911
cytoplasmic peripheral IM protein, Bifunctional aspartokinase/homoserine dehydrogenase 2 MetL
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
GLMU_ECOLI
P0ACC7
glmU

yieA
b3730 JW3708
cytoplasmic peripheral IM protein, Bifunctional GlmU
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ARNA_ECOLI
P77398
arnA

pmrI yfbG
b2255 JW2249
cytoplasmic peripheral IM protein, Bifunctional polymyxin resistance ArnA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
TRPGD_ECOLI
P00904
trpGD

trpD
b1263 JW1255
cytoplasmic peripheral IM protein, Bifunctional TrpG
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
ACCC_ECOLI
P24182
accC

fabG
b3256 JW3224
cytoplasmic peripheral IM protein, Biotin carboxylase AccC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
ARCM_ECOLI
P77624
yahI
b0323 JW0315
cytoplasmic peripheral IM protein, Carbamate kinase-like YahI
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
CARB_ECOLI
P00968
carB

pyrA
b0033 JW0031
cytoplasmic peripheral IM protein, Carbamoyl-phosphate synthase large chain CarB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
CARA_ECOLI
P0A6F1
carA

pyrA
b0032 JW0030
cytoplasmic peripheral IM protein, Carbamoyl-phosphate synthase small chain CarA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
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